Configuration
Overview
Configuration for each service is done primarily through environment variables:
Reading the configuration
The service should define a configuration type to hold all the configuration values needed. Those values can then be loaded when the service boots
In some cases, a sensible value can be set if not provided by the environment
Docker Compose
When running with docker compose, use the environments
section of the service to set the values
Kubernetes
In a Deployment
set the environment variables for each container
Service settings
Submission
The submission service uses the following configuration values
DATABASE_NAME
: postgres database name
DATABASE_USER
: postgres username
DATABASE_PASSWORD
: postgres password
DATABASE_HOST
: postgres hostname
DATABASE_PORT
: postgres access port
S3_AWS_ENDPOINT
: S3 service endpoint, only used for testing and dev
S3_ACCESS_KEY_ID
: AWS access key id for S3
S3_SECRET_ACCESS_KEY
: Aws secrety key for S3
S3_FORCE_PATH_STYLE
: Always set to 'true'
S3_FILE_BUCKET
: Name of the S3 Bucket for file uploads
NEW_RELIC_HOME
: local path to newrelic.js config file
MAX_QL_COMPLEXITY
: maximum GraphQL complexity (recommended: 100)
MAX_QL_DEPTH
: maximum GraphQL query depth (recommended: 5)
MAX_FILE_SIZE_IN_BYTES
: maximum file upload
AUTHENTICATION_JWT_SECRET
: Libero reviewer authentication secret
USER_ADAPTER_URL
: Continuum Adaptor endpoint for getting current user info (http://continuum-adaptor.url/current-user).
SCIENCE_BEAM_URL
: ScienceBeam endpoint for converting uploaded manuscript, for examplehttp://continuum-api.url/science-beam/convert.
(from continuum)
SCIENCE_BEAM_TIMEOUT
: Conversion timeout value (recommended: 20000)
Continuum Adaptor
PORT
: The listening port for the service
RABBITMQ_URL
: The url for rabbitmq.
LOGIN_URL
: The url for continuum (e.g. https://elifesciences.org/submit)
LOGIN_RETURN_URL
: The login url to return to after token exchange (e.g. https://reviewer.elifesciences.org/login)
DATABASE_NAME
: postgres database name
DATABASE_USER
: postgres username
DATABASE_PASSWORD
: postgres password
DATABASE_HOST
: postgres hostname
DATABASE_PORT
: postgres access port
AUTHENTICATION_JWT_SECRET
: Libero reviewer authentication secret
CONTINUUM_JWT_SECRET
: The secret for continuum journal (from continuum)
CONTINUUM_API_URL
: Continuum Api endpoint (from continuum)
ELIFE_API_GATEWAY_SECRET
: Elife Api Gateway secret (from continuum)
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